The quadcopter built by the team has been causing vibrations and wobbling irrespective of both manual and successful auto tuning. There seems to be a stable flight right after the autotune, but later the copter becomes unstable, giving jerks.
Not much to go on in that log but you should have configured the Notch Filter before running Auto Tune and 1st try with Aggression at default (not .07). Update to latest Stable version and set these and make another hover flight in AltHold to collect data to set the filter. Disable the 2nd Notch Filter for now.
INS_LOG_BAT_MASK,1
INS_LOG_BAT_OPT,4
PSC_ACCZ_I,0.4
PSC_ACCZ_P,0.2
No point in Running an Auto Mission hence the suggestion to make a Hover flight in AltHold. And you didn’t set the PSC parameters. Also, set the Mask to 1. The peak to address may be at 32Hz which will pick up the 62Hz peak but a simple hover flight will determine that.
And you didn’t update to latest Stable. What did you do?