So i am using Two compasses one Here 3 and a Holybro Micro M8N. The priority is set for the Here 3 and then micro M8N both the compasses are mounted on a mast and the orientation is also correct after calibrating the compasses i got compasses inconsistent error but after i disabled the Mirco M8N the problem was solved.
Should wait for a few mins before starting the calibration so both compasses get a good lock or it’s a different issue?
You need to make a flight for this. AltHold, Loiter but hover around make a lot of yaw commands and if you want to include the Motor comp make throttle changes. It’s obvious right? Make a lot of changes. Then use that log and cut the center out of it discarding take off and landing.