Tuning a VTOL with quicktune followed by autotune

Hello Lady and Gents,im about to start tuning my wee VTOL Fimi Manta and I have two questions,I intend doing the Auto Tune using a mission,I no how to set that up but to save the Auto Tune do I just have it do a VTOL or RTL at the end and let it disarm.I prefer to do the full Auto tune,My next question is regarding Quick Auto tune,I have Yaapu working on my radio and get the messages on the screen so is it ok to use them instead of being connected to mission planner I presume it is the same but just double checking