I have several Omnibus F4V3/F4V5 working flawlessly out of the box with arducopter. But I use SBUS only - so I can test PPM due to the lack of a receiver.
However, the numbering of the SERIAL/UART ports in arducopter is different to the silkscreen. For betaflight the both ports are RX1/TX1 and RX6/TX6. The one named RX6/TX6 on the silkscreen (the pins oriented to the processor) is SERIAL3 in AC 4.0.2.