1: The autopilot starts off counting micro/milliseconds - it does offset it’s counter to GPS, and log GPS time, but does not re-adjust it with GPS or does math based on GPS time, so I don’t see how it could be affected by that.
2: you create the mission with any decent, multi-platform tool; APMPlanner2, QGroundControl, mavproxy. Mission does not have any reference to time/date and don’t care for that.